CS498-CXZ Algorithms in Bioinformatics (Fall 2005)

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Assignments


General instructions

Assignments are generally due at the beginning of a class (i.e., 12:30pm of a Tuesday or Thursday). A hardcopy of your answers should be turned in at the class. If, for any reason, you cannot make a class when an assignment is due, or if you have obtained an extension of the deadline, please turn it in to an instructor through an email appointment. Computer printouts are highly appreciated, as they eliminate many problems such as ambiguous symbols and unclear handwriting. However, hand written reports are also acceptable; in that case, please write CLEARLY to avoid mis-grading.

1. Assignment 1: Exploration of Biological Databases

2. Assignment 2: Genome Sequencing

3. Assignment 3: Gene Prediction

4. Assignment 4: Pairwise Sequence Alignment

5. Assignment 5: Gene Function Analysis

6. Assignment 6: Hidden Markov Models

7. Assignment 7: Protein Sequencing and Phylogenetic Tree Construction