CS397-CXZ Algorithms in Bioinformatics (Spring 2004)

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Assignments


General instructions

Assignments are generally due at the beginning of a class (i.e., 12:30pm of a Wednesday or Friday). A hardcopy of your answers should be turned in at the class. If, for any reason, you cannot make a class when an assignment is due, or if you have obtained an extension of the deadline, please turn it in to Heather Hall. Computer printouts are highly appreciated, as they eliminate many problems such as ambiguous symbols and unclear handwriting. However, hand written reports are also acceptable; in that case, please write CLEARLY to avoid mis-grading.

1. Assignment 1: Pairwise Alignment

2. Assignment 2: Multiple Sequence Alignment

3. Assignment 3: Hidden Markov Models: Basics

4. Assignment 4: Hidden Markov Models: Protein structure prediction

5. Assignment 5: Phylogenetic Tree Construction

6. Assignment 6: Pattern Extraction and RNA Structure Analysis